Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284503-SRR8284504/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  380,545,488
 Normal Paired: 372,364,843 (97.85%)
 Chimeric Paired: 17,391 (0.00%)
 Chimeric Ambiguous: 19,403 (0.01%)
 Unmapped: 8,143,851 (2.14%)
 Ligation Motif Present: 47,287 (0.01%)
Alignable (Normal+Chimeric Paired): 372,382,234 (97.85%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-27T23:45:54,157]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 169,656,413 (44.58%)
PCR Duplicates: 202,725,821 (53.27%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 201,321,446
Intra-fragment Reads: 90,074,050 (23.67% / 53.09%)
Below MAPQ Threshold: 40,882,160 (10.74% / 24.10%)
Hi-C Contacts: 38,700,203 (10.17% / 22.81%)
 Ligation Motif Present: 18,246  (0.00% / 0.01%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,146,413  (2.14% / 4.80%)
Intra-chromosomal: 30,553,790  (8.03% / 18.01%)
Short Range (<20Kb): 20,385,129  (5.36% / 12.02%)
Long Range (>20Kb): 10,168,548  (2.67% / 5.99%)